HL_8A57_075

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_075 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3487

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8A57|1|A|G|2337
8A57|1|A|A|2338
8A57|1|A|U|2339
8A57|1|A|G|2340
8A57|1|A|G|2341
8A57|1|A|A|2342
8A57|1|A|A|2343
8A57|1|A|A|2344
8A57|1|A|U|2345

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L5