HL_8A5I_023
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 8A5I|1|A|U|793, 8A5I|1|A|A|797, 8A5I|1|A|A|798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A5I_023 not in the Motif Atlas
- Geometric match to HL_7A0S_022
- Geometric discrepancy: 0.1132
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
8A5I|1|A|C|790
8A5I|1|A|G|791
8A5I|1|A|U|792
8A5I|1|A|U|793
8A5I|1|A|G|794
8A5I|1|A|A|795
8A5I|1|A|A|796
8A5I|1|A|A|797
8A5I|1|A|A|798
8A5I|1|A|G|799
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain 7
- 50S ribosomal protein L34
- Chain H
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L22
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