8A5I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8A5I_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.2 | |
| HL_8A5I_002 | 1/A/87:95 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_8A5I_003 | 1/A/122:127 | No text annotation | geometric HL_4WF9_003 HL_75660.9 | |
| HL_8A5I_004 | 1/A/136:143 | GNRA with tandem sheared | geometric HL_4WF9_004 HL_98423.4 | |
| HL_8A5I_005 | 1/A/159:169 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_8A5I_006 | 1/A/196:203 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_8A5I_007 | 1/A/227:232 | No text annotation | geometric HL_4WF9_007 HL_91813.1 | |
| HL_8A5I_008 | 1/A/248:254 | No text annotation | geometric HL_5J7L_141 NA | |
| HL_8A5I_010 | 1/A/348:355 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_8A5I_011 | 1/A/362:366 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8A5I_012 | 1/A/370:378 | T-loop with unstacked turn | geometric HL_5J7L_144 NA | |
| HL_8A5I_013 | 1/A/428:438 | No text annotation | geometric HL_5J7L_145 NA | |
| HL_8A5I_014 | 1/A/456:463 | Pseudoknot geometry | geometric HL_5J7L_146 NA | |
| HL_8A5I_015 | 1/A/508:513 | GNRA | geometric HL_7RQB_015 NA | |
| HL_8A5I_016 | 1/A/533:538 | GNRA | geometric HL_7RQB_016 NA | |
| HL_8A5I_017 | 1/A/587:594 | No text annotation | geometric HL_4WF9_017 HL_50318.1 | |
| HL_8A5I_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.4 | |
| HL_8A5I_019 | 1/A/654:662 | tRNA anticodon loop | geometric HL_5UD5_002 HL_87306.2 | |
| HL_8A5I_020 | 1/A/674:679 | GNRA | geometric HL_7RQB_020 NA | |
| HL_8A5I_021 | 1/A/686:692 | No text annotation | geometric HL_7RQB_021 NA | |
| HL_8A5I_022 | 1/A/758:765 | No text annotation | geometric HL_7RQB_022 NA | |
| HL_8A5I_023 | 1/A/790:799 | No text annotation | geometric HL_7A0S_022 HL_50204.2 | |
| HL_8A5I_072 | 1/A/825:831 | No text annotation | homologous HL_4WF9_024 HL_79773.1 | |
| HL_8A5I_025 | 1/A/872:877 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_8A5I_027 | 1/A/1001:1008 | GNRA | geometric HL_7RQB_027 NA | |
| HL_8A5I_028 | 1/A/1024:1031 | No text annotation | geometric HL_5J7L_160 NA | |
| HL_8A5I_031 | 1/A/1267:1272 | GNRA | geometric HL_4WF9_031 HL_34789.5 | |
| HL_8A5I_032 | 1/A/1325:1333 | No text annotation | geometric HL_7RQB_033 NA | |
| HL_8A5I_033 | 1/A/1368:1374 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_8A5I_034 | 1/A/1407:1412 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_8A5I_035 | 1/A/1433:1442 | No text annotation | geometric HL_4WF9_035 HL_77449.2 | |
| HL_8A5I_036 | 1/A/1500:1511 | No text annotation | ||
| HL_8A5I_037 | 1/A/1541:1547 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_8A5I_038 | 1/A/1617:1620 | Mini UNCG | geometric HL_5J7L_172 NA | |
| HL_8A5I_039 | 1/A/1661:1668 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_8A5I_040 | 1/A/1679:1685 | GNRA | geometric HL_5J7L_174 NA | |
| HL_8A5I_041 | 1/A/1740:1745 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_8A5I_042 | 1/A/1768:1773 | GNRA | geometric HL_5Y7M_002 HL_34789.5 | |
| HL_8A5I_043 | 1/A/1785:1789 | No text annotation | geometric HL_7RQB_044 NA | |
| HL_8A5I_044 | 1/A/1810:1820 | No text annotation | geometric HL_5J7L_178 NA | |
| HL_8A5I_045 | 1/A/1839:1844 | GNRA | geometric HL_7RQB_046 NA | |
| HL_8A5I_047 | 1/A/1943:1953 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8A5I_048 | 1/A/1982:1990 | No text annotation | geometric HL_7RQB_049 NA | |
| HL_8A5I_049 | 1/A/2060:2069 | No text annotation | geometric HL_4WF9_047 HL_78372.2 | |
| HL_8A5I_051 | 1/A/2242:2248 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_8A5I_052 | 1/A/2281:2289 | LSU P loop | geometric HL_4WF9_049 HL_11974.3 | |
| HL_8A5I_053 | 1/A/2297:2309 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_8A5I_074 | 1/A/2337:2345 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8A5I_055 | 1/A/2357:2364 | Pseudoknot geometry | geometric HL_5J7L_189 NA | |
| HL_8A5I_056 | 1/A/2388:2395 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.3 | |
| HL_8A5I_057 | 1/A/2407:2412 | GNRA | geometric HL_5DDP_001 HL_34789.5 | |
| HL_8A5I_058 | 1/A/2437:2446 | No text annotation | geometric HL_7RQB_059 NA | |
| HL_8A5I_059 | 1/A/2504:2512 | No text annotation | geometric HL_4V9F_062 HL_52011.2 | |
| HL_8A5I_060 | 1/A/2561:2568 | GNRA variation | geometric HL_4WF9_057 HL_46665.3 | |
| HL_8A5I_061 | 1/A/2584:2590 | LSU A loop | geometric HL_7A0S_061 HL_48677.2 | |
| HL_8A5I_062 | 1/A/2627:2632 | GNRA | geometric HL_5J7L_196 NA | |
| HL_8A5I_063 | 1/A/2691:2696 | GNRA | geometric HL_4V9F_066 HL_34789.5 | |
| HL_8A5I_064 | 1/A/2734:2739 | Ribsomal LSU H95 | geometric HL_7A0S_064 HL_12125.3 | |
| HL_8A5I_065 | 1/A/2778:2792 | No text annotation | geometric HL_5J7L_199 NA | |
| HL_8A5I_067 | 1/A/2848:2856 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_8A5I_068 | 1/A/2885:2890 | GNRA | geometric HL_5J7L_202 NA | |
| HL_8A5I_075 | 1/B/32:46 | No text annotation | homologous HL_4V9F_074 HL_97756.4 | |
| HL_8A5I_069 | 1/B/36:42 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_8A5I_070 | 1/B/84:88 | No text annotation | geometric HL_7RQB_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8A5I_071 | No text annotation | ||
| HL_8A5I_009 | No text annotation | ||
| HL_8A5I_024 | No text annotation | ||
| HL_8A5I_026 | No text annotation | ||
| HL_8A5I_076 | No text annotation | ||
| HL_8A5I_029 | No text annotation | ||
| HL_8A5I_030 | No text annotation | ||
| HL_8A5I_046 | No text annotation | ||
| HL_8A5I_073 | No text annotation | ||
| HL_8A5I_050 | No text annotation | ||
| HL_8A5I_054 | No text annotation | ||
| HL_8A5I_066 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8A5I_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.2 | |
| IL_8A5I_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | geometric IL_5J7L_246 NA | |
| IL_8A5I_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_8A5I_112 | 1/A/56:76, 1/A/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8A5I_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | geometric IL_7RQB_004 NA | |
| IL_8A5I_005 | 1/A/185:186, 1/A/214:216 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_8A5I_006 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_8A5I_007 | 1/A/240:247, 1/A/255:261 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_009 IL_62167.4 | |
| IL_8A5I_008 | 1/A/304:305, 1/A/409:412 | Minor groove platform | geometric IL_3RW6_003 IL_24264.2 | |
| IL_8A5I_009 | 1/A/309:315, 1/A/403:405 | No text annotation | ||
| IL_8A5I_010 | 1/A/318:327, 1/A/398:400 | No text annotation | ||
| IL_8A5I_011 | 1/A/335:337, 1/A/386:390 | No text annotation | geometric IL_5J7L_254 NA | |
| IL_8A5I_012 | 1/A/343:345, 1/A/358:359 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_8A5I_013 | 1/A/527:530, 1/A/541:554 | No text annotation | homologous IL_4WF9_015 IL_44923.2 | |
| IL_8A5I_014 | 1/A/581:584, 1/A/597:600 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_8A5I_015 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.4 | |
| IL_8A5I_016 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack | geometric IL_7RQB_016 NA | |
| IL_8A5I_017 | 1/A/718:720, 1/A/852:854 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_8A5I_018 | 1/A/720:724, 1/A/845:852 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8A5I_019 | 1/A/743:744, 1/A/809:811 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8A5I_020 | 1/A/748:749, 1/A/774:776 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_8A5I_021 | 1/A/749:753, 1/A/770:774 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_8A5I_022 | 1/A/784:786, 1/A/803:804 | Major groove platform | geometric IL_4WF9_026 IL_48076.9 | |
| IL_8A5I_023 | 1/A/821:823, 1/A/833:837 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8A5I_024 | 1/A/883:884, 1/A/986:988 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_8A5I_025 | 1/A/889:894, 1/A/979:981 | Major groove platform with extra pair | geometric IL_4AOB_003 IL_15698.6 | |
| IL_8A5I_113 | 1/A/889:895, 1/A/977:981 | No text annotation | ||
| IL_8A5I_026 | 1/A/894:895, 1/A/977:979 | 90 degree turn | geometric IL_7A0S_024 IL_79144.1 | |
| IL_8A5I_027 | 1/A/898:899, 1/A/972:974 | Single bulged U | geometric IL_4KZD_001 IL_97561.6 | |
| IL_8A5I_028 | 1/A/903:909, 1/A/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.2 | |
| IL_8A5I_029 | 1/A/909:910, 1/A/960:962 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_8A5I_030 | 1/A/911:915, 1/A/956:959 | C-loop | geometric IL_4WF9_033 IL_16301.2 | |
| IL_8A5I_032 | 1/A/922:926, 1/A/945:949 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8A5I_034 | 1/A/998:1000, 1/A/1009:1011 | No text annotation | geometric IL_7RQB_034 NA | |
| IL_8A5I_035 | 1/A/1040:1042, 1/A/1205:1206 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_8A5I_036 | 1/A/1044:1048, 1/A/1199:1203 | UAA/GAN | geometric IL_5J7L_277 NA | |
| IL_8A5I_037 | 1/A/1050:1057, 1/A/1196:1197 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_8A5I_038 | 1/A/1057:1059, 1/A/1195:1196 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8A5I_039 | 1/A/1064:1070, 1/A/1186:1190 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_8A5I_040 | 1/A/1070:1076, 1/A/1170:1186 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_8A5I_041 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_8A5I_117 | 1/A/1089:1103, 1/A/1127:1158 | No text annotation | ||
| IL_8A5I_043 | 1/A/1242:1244, 1/A/1292:1295 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.6 | |
| IL_8A5I_044 | 1/A/1250:1252, 1/A/1284:1286 | Isolated cWH basepair | geometric IL_4WF9_045 IL_10892.3 | |
| IL_8A5I_045 | 1/A/1253:1260, 1/A/1279:1283 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_8A5I_046 | 1/A/1264:1266, 1/A/1273:1275 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_8A5I_047 | 1/A/1307:1314, 1/A/2044:2050 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_048 IL_62167.4 | |
| IL_8A5I_048 | 1/A/1354:1357, 1/A/1652:1653 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_8A5I_049 | 1/A/1363:1367, 1/A/1375:1377 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_06671.2 | |
| IL_8A5I_050 | 1/A/1395:1399, 1/A/1420:1424 | UAA/GAN | geometric IL_5J7L_292 NA | |
| IL_8A5I_051 | 1/A/1401:1405, 1/A/1414:1418 | tSH-tWH-tHS | geometric IL_5J7L_293 NA | |
| IL_8A5I_052 | 1/A/1456:1458, 1/A/1637:1639 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_01003.5 | |
| IL_8A5I_053 | 1/A/1459:1466, 1/A/1633:1636 | No text annotation | ||
| IL_8A5I_054 | 1/A/1467:1471, 1/A/1629:1632 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_8A5I_055 | 1/A/1482:1485, 1/A/1609:1613 | No text annotation | ||
| IL_8A5I_056 | 1/A/1487:1490, 1/A/1603:1607 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_8A5I_057 | 1/A/1518:1521, 1/A/1571:1575 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_8A5I_058 | 1/A/1525:1528, 1/A/1564:1567 | Double sheared | geometric IL_4LFB_060 IL_58355.3 | |
| IL_8A5I_059 | 1/A/1531:1533, 1/A/1554:1561 | No text annotation | ||
| IL_8A5I_060 | 1/A/1538:1540, 1/A/1548:1549 | Single bulged A | geometric IL_5J7L_302 NA | |
| IL_8A5I_061 | 1/A/1700:1705, 1/A/2037:2039 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_8A5I_062 | 1/A/1712:1714, 1/A/2028:2030 | Isolated tWW turn | geometric IL_7RQB_065 NA | |
| IL_8A5I_063 | 1/A/1715:1718, 1/A/2026:2027 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_8A5I_115 | 1/A/1715:1723, 1/A/2023:2027 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_8A5I_064 | 1/A/1718:1723, 1/A/2023:2026 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_8A5I_065 | 1/A/1735:1740, 1/A/1745:1751 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.2 | |
| IL_8A5I_066 | 1/A/1760:1765, 1/A/1776:1780 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8A5I_067 | 1/A/1803:1804, 1/A/2013:2015 | Single bulged A | geometric IL_5J7L_312 NA | |
| IL_8A5I_068 | 1/A/1831:1837, 1/A/1846:1854 | Kink-turn related | geometric IL_7RQB_070 NA | |
| IL_8A5I_069 | 1/A/1870:1873, 1/A/1935:1936 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 NA | |
| IL_8A5I_070 | 1/A/1874:1875, 1/A/1931:1934 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_8A5I_071 | 1/A/1879:1882, 1/A/1926:1927 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_316 NA | |
| IL_8A5I_072 | 1/A/1884:1888, 1/A/1920:1924 | UAA/GAN with extra stack | geometric IL_7RQB_074 NA | |
| IL_8A5I_073 | 1/A/1889:1893, 1/A/1915:1919 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_8A5I_074 | 1/A/1897:1900, 1/A/1907:1911 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_8A5I_075 | 1/A/1966:1967, 1/A/1997:2000 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_8A5I_076 | 1/A/1967:1978, 1/A/1994:1997 | No text annotation | geometric IL_4WF9_077 IL_84014.2 | |
| IL_8A5I_077 | 1/A/2083:2085, 1/A/2650:2651 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_8A5I_078 | 1/A/2087:2089, 1/A/2645:2648 | No text annotation | geometric IL_4WF9_079 IL_80025.2 | |
| IL_8A5I_079 | 1/A/2100:2102, 1/A/2475:2476 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_8A5I_080 | 1/A/2103:2104, 1/A/2471:2474 | Minor groove platform | geometric IL_4V9F_075 IL_34520.4 | |
| IL_8A5I_081 | 1/A/2114:2116, 1/A/2269:2272 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_8A5I_083 | 1/A/2235:2237, 1/A/2253:2254 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8A5I_084 | 1/A/2330:2332, 1/A/2350:2354 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8A5I_085 | 1/A/2383:2386, 1/A/2397:2400 | Double sheared | geometric IL_5J7L_333 NA | |
| IL_8A5I_086 | 1/A/2434:2436, 1/A/2447:2448 | Single bulged U | geometric IL_2R8S_004 IL_97561.6 | |
| IL_8A5I_087 | 1/A/2486:2487, 1/A/2531:2533 | Single stack bend | geometric IL_4WF9_089 IL_15011.4 | |
| IL_8A5I_088 | 1/A/2487:2488, 1/A/2529:2531 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_8A5I_089 | 1/A/2490:2492, 1/A/2526:2527 | Major groove platform | geometric IL_4WF9_091 IL_48076.9 | |
| IL_8A5I_090 | 1/A/2492:2494, 1/A/2522:2526 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8A5I_091 | 1/A/2499:2503, 1/A/2513:2517 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_8A5I_092 | 1/A/2540:2541, 1/A/2613:2615 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_8A5I_093 | 1/A/2543:2545, 1/A/2607:2611 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_8A5I_094 | 1/A/2545:2546, 1/A/2604:2607 | No text annotation | geometric IL_4WF9_096 IL_44609.3 | |
| IL_8A5I_095 | 1/A/2555:2556, 1/A/2573:2576 | Major groove platform with intercalation | geometric IL_4WF9_097 IL_94991.2 | |
| IL_8A5I_096 | 1/A/2624:2625, 1/A/2634:2636 | No text annotation | geometric IL_9AXU_106 IL_14190.3 | |
| IL_8A5I_097 | 1/A/2669:2673, 1/A/2807:2815 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_8A5I_098 | 1/A/2685:2691, 1/A/2696:2701 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_8A5I_099 | 1/A/2713:2717, 1/A/2758:2760 | C-loop | geometric IL_5J7L_347 NA | |
| IL_8A5I_100 | 1/A/2720:2724, 1/A/2751:2755 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 NA | |
| IL_8A5I_101 | 1/A/2728:2729, 1/A/2744:2747 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_8A5I_102 | 1/A/2770:2775, 1/A/2795:2800 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_8A5I_103 | 1/A/2867:2868, 1/A/2907:2909 | Major groove intercalation | geometric IL_5J7L_355 NA | |
| IL_8A5I_104 | 1/A/2872:2875, 1/A/2899:2903 | No text annotation | geometric IL_7RQB_109 NA | |
| IL_8A5I_105 | 1/A/2876:2881, 1/A/2894:2898 | tHS double platform | geometric IL_4WF9_108 IL_48489.2 | |
| IL_8A5I_106 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.3 | |
| IL_8A5I_107 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_8A5I_108 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_8A5I_109 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8A5I_110 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_8A5I_111 | 1/B/78:80, 1/B/92:94 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8A5I_031 | Isolated cWS basepair | ||
| IL_8A5I_033 | No text annotation | ||
| IL_8A5I_114 | No text annotation | ||
| IL_8A5I_042 | No text annotation | ||
| IL_8A5I_082 | No text annotation | ||
| IL_8A5I_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8A5I_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8A5I_017 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_4WF9_011 J3_17917.2 | |
| J3_8A5I_018 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_07616.2 | |
| J3_8A5I_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_8A5I_003 | 1/A/271:275, 1/A/294:301, 1/A/415:416 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8A5I_019 | 1/A/339:343, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_8A5I_004 | 1/A/729:735, 1/A/819:821, 1/A/837:840 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_8A5I_005 | 1/A/744:746, 1/A/778:782, 1/A/806:809 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_8A5I_006 | 1/A/1342:1347, 1/A/1674:1676, 1/A/1688:1691 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_8A5I_007 | 1/A/1349:1353, 1/A/1654:1660, 1/A/1669:1672 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_8A5I_008 | 1/A/1388:1394, 1/A/1425:1429, 1/A/1446:1447 | No text annotation | homologous J3_7A0S_018 J3_94309.2 | |
| J3_8A5I_009 | 1/A/1475:1479, 1/A/1616:1617, 1/A/1620:1625 | No text annotation | geometric J3_4V9F_017 J3_08594.2 | |
| J3_8A5I_011 | 1/A/2124:2126, 1/A/2229:2234, 1/A/2255:2261 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_8A5I_020 | 1/A/2315:2317, 1/A/2417:2428, 1/A/2454:2460 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8A5I_012 | 1/A/2328:2330, 1/A/2354:2356, 1/A/2365:2370 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_8A5I_013 | 1/A/2550:2553, 1/A/2578:2580, 1/A/2594:2600 | No text annotation | homologous J3_8VTW_008 NA | |
| J3_8A5I_014 | 1/A/2822:2824, 1/A/2835:2840, 1/A/2918:2922 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_8A5I_015 | 1/A/2842:2844, 1/A/2860:2865, 1/A/2911:2916 | No text annotation | ||
| J3_8A5I_016 | 1/B/9:14, 1/B/66:67, 1/B/105:107 | No text annotation | ||
| J4_8A5I_001 | 1/A/270:271, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.2 | |
| J4_8A5I_002 | 1/A/339:343, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_8A5I_003 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:702 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8A5I_004 | 1/A/1315:1320, 1/A/1338:1339, 1/A/1694:1697, 1/A/2042:2043 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_8A5I_005 | 1/A/1354:1358, 1/A/1382:1387, 1/A/1448:1449, 1/A/1646:1653 | No text annotation | homologous J4_4WF9_005 J4_77353.2 | |
| J4_8A5I_006 | 1/A/1357:1358, 1/A/1382:1387, 1/A/1448:1449, 1/A/1646:1652 | No text annotation | homologous J4_4WF9_006 J4_48150.2 | |
| J4_8A5I_007 | 1/A/1805:1809, 1/A/1821:1825, 1/A/1860:1863, 1/A/2008:2012 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8A5I_008 | 1/A/1866:1868, 1/A/1938:1939, 1/A/1957:1966, 1/A/2000:2005 | No text annotation | homologous J4_9DFE_008 J4_42306.2 | |
| J4_8A5I_009 | 1/A/2318:2322, 1/A/2376:2380, 1/A/2403:2405, 1/A/2414:2416 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8A5I_010 | 1/A/2676:2679, 1/A/2707:2709, 1/A/2764:2768, 1/A/2802:2804 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_8A5I_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/177:179 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8A5I_002 | 1/A/270:275, 1/A/294:301, 1/A/415:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
| J5_8A5I_003 | 1/A/576:578, 1/A/603:607, 1/A/620:622, 1/A/1306:1307, 1/A/2050:2051 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_8A5I_004 | 1/A/627:632, 1/A/714:717, 1/A/855:858, 1/A/1241:1242, 1/A/1295:1301 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_8A5I_005 | 1/A/1723:1731, 1/A/1755:1756, 1/A/1784:1785, 1/A/1789:1797, 1/A/2021:2023 | No text annotation | homologous J5_4WF9_005 J5_99177.2 | |
| J5_8A5I_006 | 1/A/2090:2097, 1/A/2479:2486, 1/A/2533:2540, 1/A/2615:2621, 1/A/2639:2644 | No text annotation | ||
| J5_8A5I_007 | 1/A/2107:2110, 1/A/2276:2279, 1/A/2291:2292, 1/A/2314:2315, 1/A/2460:2468 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_8A5I_001 | 1/A/45:46, 1/A/180:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/472:479 | No text annotation | ||
| J6_8A5I_002 | 1/A/2107:2110, 1/A/2276:2279, 1/A/2291:2292, 1/A/2314:2317, 1/A/2417:2428, 1/A/2454:2468 | No text annotation | ||
| J7_8A5I_001 | 1/A/8:15, 1/A/570:576, 1/A/2051:2056, 1/A/2073:2076, 1/A/2658:2663, 1/A/2821:2822, 1/A/2922:2923 | No text annotation | ||
| J7_8A5I_002 | 1/A/863:868, 1/A/881:882, 1/A/989:992, 1/A/1017:1022, 1/A/1033:1037, 1/A/1209:1210, 1/A/1231:1236 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8A5I_010 | No text annotation |
Coloring options: