HL_8A5I_026

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUUCUCGG

Length

9 nucleotides

Bulged bases

8A5I|1|A|U|936

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_026 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2786

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

8A5I|1|A|C|931
8A5I|1|A|C|932
8A5I|1|A|U|933
8A5I|1|A|U|934
8A5I|1|A|C|935
8A5I|1|A|U|936
8A5I|1|A|C|937
8A5I|1|A|G|938
8A5I|1|A|G|939

Current chains

Chain A

23S ribosomal RNA

Nearby chains