HL_8A5I_031

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_031 not in the Motif Atlas

Geometric match to HL_4WF9_031

Geometric discrepancy: 0.0953

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8A5I|1|A|C|1267
8A5I|1|A|G|1268
8A5I|1|A|G|1269
8A5I|1|A|A|1270
8A5I|1|A|A|1271
8A5I|1|A|G|1272

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21