HL_8A5I_035

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAGAGAUUC

Length

10 nucleotides

Bulged bases

8A5I|1|A|U|1440, 8A5I|1|A|U|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_035 not in the Motif Atlas

Geometric match to HL_4WF9_035

Geometric discrepancy: 0.2602

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8A5I|1|A|G|1433
8A5I|1|A|U|1434
8A5I|1|A|A|1435
8A5I|1|A|G|1436
8A5I|1|A|A|1437
8A5I|1|A|G|1438
8A5I|1|A|A|1439
8A5I|1|A|U|1440
8A5I|1|A|U|1441
8A5I|1|A|C|1442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23