HL_8A5I_036

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAUGGAAAUG

Length

12 nucleotides

Bulged bases

8A5I|1|A|A|1503, 8A5I|1|A|U|1504, 8A5I|1|A|U|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|C|1500
8A5I|1|A|G|1501
8A5I|1|A|A|1502
8A5I|1|A|A|1503
8A5I|1|A|U|1504
8A5I|1|A|G|1505
8A5I|1|A|G|1506
8A5I|1|A|A|1507
8A5I|1|A|A|1508
8A5I|1|A|A|1509
8A5I|1|A|U|1510
8A5I|1|A|G|1511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L17