HL_8A5I_048

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8A5I|1|A|U|1988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_048 not in the Motif Atlas

Geometric match to HL_7RQB_049

Geometric discrepancy: 0.0546

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

8A5I|1|A|G|1982
8A5I|1|A|G|1983
8A5I|1|A|U|1984
8A5I|1|A|A|1985
8A5I|1|A|A|1986
8A5I|1|A|G|1987
8A5I|1|A|U|1988
8A5I|1|A|U|1989
8A5I|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L14