HL_8A5I_049

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8A5I|1|A|A|2063, 8A5I|1|A|A|2064, 8A5I|1|A|G|2065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_049 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.1074

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

8A5I|1|A|G|2060
8A5I|1|A|U|2061
8A5I|1|A|G|2062
8A5I|1|A|A|2063
8A5I|1|A|A|2064
8A5I|1|A|G|2065
8A5I|1|A|A|2066
8A5I|1|A|U|2067
8A5I|1|A|G|2068
8A5I|1|A|C|2069

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32-2

Chain H

50S ribosomal protein L3