HL_8A5I_050

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAGAGACGUGUGCGCUAGCAUACGAGGAG

Length

31 nucleotides

Bulged bases

8A5I|1|A|A|2165, 8A5I|1|A|C|2178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|C|2162
8A5I|1|A|G|2163
8A5I|1|A|A|2164
8A5I|1|A|A|2165
8A5I|1|A|G|2166
8A5I|1|A|A|2167
8A5I|1|A|G|2168
8A5I|1|A|A|2169
8A5I|1|A|C|2170
8A5I|1|A|G|2171
8A5I|1|A|U|2172
8A5I|1|A|G|2173
8A5I|1|A|U|2174
8A5I|1|A|G|2175
8A5I|1|A|C|2176
8A5I|1|A|G|2177
8A5I|1|A|C|2178
8A5I|1|A|U|2179
8A5I|1|A|A|2180
8A5I|1|A|G|2181
8A5I|1|A|C|2182
8A5I|1|A|A|2183
8A5I|1|A|U|2184
8A5I|1|A|A|2185
8A5I|1|A|C|2186
8A5I|1|A|G|2187
8A5I|1|A|A|2188
8A5I|1|A|G|2189
8A5I|1|A|G|2190
8A5I|1|A|A|2191
8A5I|1|A|G|2192

Current chains

Chain A

23S ribosomal RNA

Nearby chains