HL_8A5I_052

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8A5I|1|A|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_052 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.0879

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8A5I|1|A|C|2281
8A5I|1|A|U|2282
8A5I|1|A|G|2283
8A5I|1|A|G|2284
8A5I|1|A|G|2285
8A5I|1|A|G|2286
8A5I|1|A|C|2287
8A5I|1|A|G|2288
8A5I|1|A|G|2289

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27