HL_8A5I_059

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_059 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.0886

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8A5I|1|A|A|2504
8A5I|1|A|G|2505
8A5I|1|A|U|2506
8A5I|1|A|C|2507
8A5I|1|A|C|2508
8A5I|1|A|A|2509
8A5I|1|A|C|2510
8A5I|1|A|A|2511
8A5I|1|A|U|2512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain P

50S ribosomal protein L16