HL_8A5I_073

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUUGUACCGCUUGUACAGGAUAGGUAGGAGCCGAAGAGACGUGUGCGCUAGCAUACGAGGAGGCAAUGGUGGGAUACUACCCUGGCUGUAUGACC

Length

96 nucleotides

Bulged bases

8A5I|1|A|U|2141, 8A5I|1|A|A|2159, 8A5I|1|A|A|2165, 8A5I|1|A|U|2205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|G|2130
8A5I|1|A|U|2131
8A5I|1|A|U|2132
8A5I|1|A|U|2133
8A5I|1|A|G|2134
8A5I|1|A|U|2135
8A5I|1|A|A|2136
8A5I|1|A|C|2137
8A5I|1|A|C|2138
8A5I|1|A|G|2139
8A5I|1|A|C|2140
8A5I|1|A|U|2141
8A5I|1|A|U|2142
8A5I|1|A|G|2143
8A5I|1|A|U|2144
8A5I|1|A|A|2145
8A5I|1|A|C|2146
8A5I|1|A|A|2147
8A5I|1|A|G|2148
8A5I|1|A|G|2149
8A5I|1|A|A|2150
8A5I|1|A|U|2151
8A5I|1|A|A|2152
8A5I|1|A|G|2153
8A5I|1|A|G|2154
8A5I|1|A|U|2155
8A5I|1|A|A|2156
8A5I|1|A|G|2157
8A5I|1|A|G|2158
8A5I|1|A|A|2159
8A5I|1|A|G|2160
8A5I|1|A|C|2161
8A5I|1|A|C|2162
8A5I|1|A|G|2163
8A5I|1|A|A|2164
8A5I|1|A|A|2165
8A5I|1|A|G|2166
8A5I|1|A|A|2167
8A5I|1|A|G|2168
8A5I|1|A|A|2169
8A5I|1|A|C|2170
8A5I|1|A|G|2171
8A5I|1|A|U|2172
8A5I|1|A|G|2173
8A5I|1|A|U|2174
8A5I|1|A|G|2175
8A5I|1|A|C|2176
8A5I|1|A|G|2177
8A5I|1|A|C|2178
8A5I|1|A|U|2179
8A5I|1|A|A|2180
8A5I|1|A|G|2181
8A5I|1|A|C|2182
8A5I|1|A|A|2183
8A5I|1|A|U|2184
8A5I|1|A|A|2185
8A5I|1|A|C|2186
8A5I|1|A|G|2187
8A5I|1|A|A|2188
8A5I|1|A|G|2189
8A5I|1|A|G|2190
8A5I|1|A|A|2191
8A5I|1|A|G|2192
8A5I|1|A|G|2193
8A5I|1|A|C|2194
8A5I|1|A|A|2195
8A5I|1|A|A|2196
8A5I|1|A|U|2197
8A5I|1|A|G|2198
8A5I|1|A|G|2199
8A5I|1|A|U|2200
8A5I|1|A|G|2201
8A5I|1|A|G|2202
8A5I|1|A|G|2203
8A5I|1|A|A|2204
8A5I|1|A|U|2205
8A5I|1|A|A|2206
8A5I|1|A|C|2207
8A5I|1|A|U|2208
8A5I|1|A|A|2209
8A5I|1|A|C|2210
8A5I|1|A|C|2211
8A5I|1|A|C|2212
8A5I|1|A|U|2213
8A5I|1|A|G|2214
8A5I|1|A|G|2215
8A5I|1|A|C|2216
8A5I|1|A|U|2217
8A5I|1|A|G|2218
8A5I|1|A|U|2219
8A5I|1|A|A|2220
8A5I|1|A|U|2221
8A5I|1|A|G|2222
8A5I|1|A|A|2223
8A5I|1|A|C|2224
8A5I|1|A|C|2225

Current chains

Chain A

23S ribosomal RNA

Nearby chains