HL_8AAF_027

3D structure

PDB id

8AAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8AAF|1|f|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AAF_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2388

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8AAF|1|f|C|1239
8AAF|1|f|A|1240
8AAF|1|f|U|1241
8AAF|1|f|G|1242
8AAF|1|f|G|1243
8AAF|1|f|A|1244
8AAF|1|f|A|1245
8AAF|1|f|G|1246
8AAF|1|f|U|1247
8AAF|1|f|C|1248
8AAF|1|f|G|1249

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain z

60S ribosomal protein L12-B