HL_8AAF_081

3D structure

PDB id

8AAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUIGCAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AAF_081 not in the Motif Atlas

Homologous match to HL_4JYZ_002

Geometric discrepancy: 0.5755

The information below is about HL_4JYZ_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8AAF|1|y|C|31
8AAF|1|y|U|32
8AAF|1|y|U|33
8AAF|1|y|I|34
8AAF|1|y|G|35
8AAF|1|y|C|36
8AAF|1|y|A|37
8AAF|1|y|U|38
8AAF|1|y|G|39

Current chains

Chain y

Ala tRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain v

Eukaryotic translation initiation factor 5A-1