Motif HL_77436.5 Version HL_77436.5 of this group appears in releases 3.96 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_029 | 7A0S | 0.8368 | 1 | GNRA related | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | |
| 2 | HL_4V9F_049 | 4V9F | 0.6166 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |
| 3 | HL_2D6F_005 | 2D6F | 0.6308 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |
| 4 | HL_3IVK_005 | 3IVK | 0.5422 | 1 | T-loop related | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 98 | C | 99 | cWW | ntSH | |
| 5 | HL_1QTQ_002 | 1QTQ | 0.5479 | 2 | tRNA anticodon loop with synthetase | B | tRNA | A | 931 | U | 932 | U | 933 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH | |
| 6 | HL_4JYZ_002 | 4JYZ | 0.5623 | 2 | tRNA anticodon loop with synthetase | B | tRNA | U | 931 | OMU | 932 | U | 933 | U | 935 | 2MA | 937 | PSU | 938 | A | 939 | cWW | ntSH | |
| 7 | HL_8CRE_008 | 8CRE | 0.2022 | 3 | T-loop related | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 8 | HL_8P9A_120 | 8P9A | 0.1894 | 3 | T-loop related | AR | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 9 | HL_3R4F_001 | 3R4F | 0.2262 | 1 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW | |
| 10 | HL_5J7L_024 | 5J7L | 0.1767 | 1 | T-loop related | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 11 | HL_4LFB_025 | 4LFB | 0.1588 | 1 | T-loop related | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 12 | HL_8P9A_218 | 8P9A | 0.1326 | 1 | T-loop related | sR | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 13 | HL_8CRE_219 | 8CRE | 0.0000 | 1 | T-loop related | CM | SSU rRNA | C | 1294 | U | 1295 | U | 1296 | A | 1297 | A | 1298 | U | 1300 | G | 1301 | cWW | cwW | |
| 14 | HL_8CRE_023 | 8CRE | 0.1448 | 1 | T-loop related | 1 | LSU rRNA | C | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | G | 1079 | cWW | cwW | |
| 15 | HL_8P9A_136 | 8P9A | 0.1554 | 1 | T-loop related | AR | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 16 | HL_7TZS_002 | 7TZS | 0.4524 | 1 | T-loop related | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | ||
| 17 | HL_3K0J_002 | 3K0J | 0.4465 | 1 | T-loop related | E | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | ||
| 18 | HL_3D2V_002 | 3D2V | 0.4526 | 1 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | A | 57 | A | 58 | U | 59 | C | 61 | cWW | ||
| 19 | HL_4V9F_039 | 4V9F | 0.4993 | 0 | Other HL | 0 | LSU rRNA | C | 1594 | G | 1595 | U | 1596 | A | 1597 | A | 1598 | U | 1599 | G | 1600 | cWW | ||
| 20 | HL_8P9A_195 | 8P9A | 0.4847 | 1 | T-loop with 1 bulged base | sR | SSU rRNA | G | 243 | A | 244 | U | 245 | G | 246 | A | 247 | U | 248 | C | 250 | cWW | ||
| 21 | HL_8CRE_196 | 8CRE | 0.4780 | 1 | T-loop with 1 bulged base | CM | SSU rRNA | G | 241 | A | 242 | U | 243 | G | 244 | A | 245 | U | 246 | C | 248 | cWW | ||
| 22 | HL_5CCB_003 | 5CCB | 0.6850 | 2 | T-loop related | N | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 58||A | G | 59 | C | 61 | cWW | ||
| 23 | HL_4WF9_019 | 4WF9 | 0.5765 | 2 | Other HL | X | LSU rRNA | C | 654 | A | 655 | G | 656 | U | 657 | A | 659 | U | 661 | G | 662 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAAUUG | 4 |
| UUUGGGAAUG | 2 |
| GUUAAGUC | 2 |
| GAUAAUGC | 2 |
| GAUGAUUC | 2 |
| CGUAAUAG | 1 |
| CGUACAAG | 1 |
| GCUUUGGAC | 1 |
| GUUAAAAC | 1 |
| AUUCUGAUU | 1 |
| UUUGA | 1 |
| AUUGAGUU | 1 |
| GGUAAUGC | 1 |
| CGUAAUG | 1 |
| GUUCAAGUC | 1 |
| CAGUAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 4 |
| UUGGGAAU | 2 |
| UUAAGU | 2 |
| AUAAUG | 2 |
| AUGAUU | 2 |
| GUAAUA | 1 |
| GUACAA | 1 |
| CUUUGGA | 1 |
| UUAAAA | 1 |
| UUCUGAU | 1 |
| (OMU)U(1RN)UG(2MA)(PSU) | 1 |
| UUGAGU | 1 |
| GUAAUG | 1 |
| GUAAU | 1 |
| UUCAAGU | 1 |
| AGUAAAU | 1 |
- Annotations
-
- T-loop related (14)
- tRNA anticodon loop with synthetase (2)
- Other HL (2)
- GNRA related (2)
- T-loop with 1 bulged base (2)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.53 | Max 0.97
Coloring options: