HL_8AGT_049

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGT_049 not in the Motif Atlas

Geometric match to HL_8VTW_010

Geometric discrepancy: 0.106

The information below is about HL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8AGT|1|f|G|2253
8AGT|1|f|U|2254
8AGT|1|f|A|2262
8AGT|1|f|C|2263

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2