HL_8AGU_048

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGU_048 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.0882

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8AGU|1|f|A|2220
8AGU|1|f|G|2221
8AGU|1|f|A|2222
8AGU|1|f|A|2223
8AGU|1|f|A|2224
8AGU|1|f|U|2225

Current chains

Chain f

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L36-A

Chain b

60S ribosomal protein L42-A

Chain w

60S ribosomal protein L1-A