RNA 3D Hub //

8AGU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8AGU_0011/f/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_8AGU_0021/f/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8AGU_0031/f/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_8AGU_0041/f/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_8AGU_0051/f/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8AGU_0061/f/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8AGU_0071/f/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8AGU_0081/f/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_8AGU_0091/f/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_8AGU_0101/f/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8AGU_0111/f/382:387GNRA
homologous
HL_8C3A_011
NA
HL_8AGU_0811/f/542:549No text annotation
homologous
HL_8P9A_124
NA
HL_8AGU_0121/f/543:548No text annotation
homologous
HL_5TBW_012
NA
HL_8AGU_0131/f/599:604GNRA
homologous
HL_5TBW_013
NA
HL_8AGU_0141/f/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8AGU_0151/f/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_8AGU_0161/f/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8AGU_0171/f/732:737GNRA
homologous
HL_5TBW_017
NA
HL_8AGU_0181/f/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_8AGU_0191/f/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8AGU_0201/f/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_8AGU_0211/f/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_8AGU_0221/f/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8AGU_0231/f/1023:1029GNRA
homologous
HL_5TBW_023
NA
HL_8AGU_0241/f/1076:1083No text annotation
homologous
HL_5TBW_024
NA
HL_8AGU_0251/f/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8AGU_0261/f/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8AGU_0271/f/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_8AGU_0281/f/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8AGU_0291/f/1347:1357No text annotation
homologous
HL_5TBW_029
NA
HL_8AGU_0301/f/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8AGU_0311/f/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8AGU_0321/f/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8AGU_0331/f/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8AGU_0341/f/1563:1576No text annotation
HL_8AGU_0351/f/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8AGU_0361/f/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8AGU_0371/f/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_8AGU_0381/f/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8AGU_0391/f/1759:1766No text annotation
homologous
HL_8P9A_150
HL_25967.2
HL_8AGU_0401/f/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_8AGU_0411/f/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_8AGU_0421/f/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8AGU_0431/f/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_8AGU_0451/f/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_8AGU_0461/f/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8AGU_0471/f/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8AGU_0481/f/2220:2225GNRA
homologous
HL_8C3A_048
NA
HL_8AGU_0501/f/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_8AGU_0511/f/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8AGU_0521/f/2470:2475No text annotation
geometric
HL_8C3A_013
NA
HL_8AGU_0531/f/2535:2544No text annotation
HL_8AGU_0541/f/2568:2573No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_8AGU_0551/f/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_8AGU_0561/f/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_8AGU_0571/f/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_8AGU_0581/f/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8AGU_0591/f/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8AGU_0601/f/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_8AGU_0611/f/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8AGU_0621/f/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_8AGU_0631/f/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_8AGU_0641/f/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_8AGU_0651/f/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_8AGU_0661/f/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_8AGU_0671/f/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8AGU_0681/f/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8AGU_0691/f/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_8AGU_0701/f/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_8AGU_0711/f/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_8AGU_0721/f/3350:3353Mini UNCG
geometric
HL_5VW1_002
HL_48778.2
HL_8AGU_0831/h/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8AGU_0731/h/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_8AGU_0741/h/88:93GNRA
homologous
HL_5TBW_186
NA
HL_8AGU_0841/i/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_8AGU_0751/i/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8AGU_0761/i/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8AGU_0771/i/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_8AGU_0791/y/31:39No text annotation
HL_8AGU_0801/y/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V9Q_215
HL_28252.8

Problematic loops

#loop idProblemSequence
HL_8AGU_082No text annotation
HL_8AGU_044No text annotation
HL_8AGU_049No text annotation
HL_8AGU_078tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8AGU_0021/f/7:8,
1/i/150:152		Single bulged C
homologous
IL_5TBW_002
NA
IL_8AGU_0031/f/13:15,
1/i/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8AGU_0041/f/27:28,
1/f/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8AGU_0051/f/31:38,
1/f/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_8AGU_0061/f/82:89,
1/f/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_8AGU_0071/f/123:124,
1/f/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_8AGU_0081/f/125:127,
1/f/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8AGU_0091/f/163:165,
1/f/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_8AGU_0101/f/169:170,
1/f/248:253		No text annotation
homologous
IL_5TBW_010
NA
IL_8AGU_0111/f/177:178,
1/f/238:241		Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_8AGU_0121/f/189:191,
1/f/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8AGU_0131/f/337:339,
1/i/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8AGU_0141/f/376:379,
1/f/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_8AGU_0151/f/404:410,
1/i/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_8AGU_0161/f/429:431,
1/f/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8AGU_0181/f/512:513,
1/f/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_8AGU_0191/f/517:525,
1/f/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_8AGU_0201/f/531:538,
1/f/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_8AGU_0211/f/668:670,
1/f/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8AGU_0221/f/680:684,
1/f/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_8AGU_0231/f/725:728,
1/f/741:745		UAA/GAN
homologous
IL_5TBW_023
NA
IL_8AGU_0241/f/752:753,
1/f/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_8AGU_0251/f/755:756,
1/f/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_8AGU_0261/f/758:763,
1/f/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_8AGU_0271/f/803:805,
1/f/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8AGU_0281/f/805:809,
1/f/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_8AGU_0291/f/833:834,
1/f/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8AGU_0301/f/834:838,
1/f/855:859		Triple sheared
geometric
IL_4WF9_024
IL_50730.2
IL_8AGU_0311/f/869:872,
1/f/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8AGU_0321/f/873:875,
1/f/886:887		Single bulged U
homologous
IL_5TBW_032
NA
IL_8AGU_0331/f/907:909,
1/f/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8AGU_0341/f/954:956,
1/f/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8AGU_0351/f/969:970,
1/f/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8AGU_0361/f/977:982,
1/f/1101:1104		No text annotation
IL_8AGU_0371/f/983:985,
1/f/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8AGU_0381/f/991:997,
1/f/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_8AGU_0391/f/997:998,
1/f/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_8AGU_0401/f/999:1004,
1/f/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8AGU_0411/f/1006:1009,
1/f/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_8AGU_0421/f/1009:1011,
1/f/1039:1041		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_8AGU_0431/f/1014:1018,
1/f/1034:1036		Isolated non-canonical cWW pair
geometric
IL_3TD0_002
IL_57744.1
IL_8AGU_0441/f/1069:1071,
1/f/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_8AGU_0451/f/1074:1076,
1/f/1083:1084		Single bulged G
homologous
IL_8C3A_048
NA
IL_8AGU_0461/f/1120:1122,
1/f/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8AGU_0481/f/1167:1171,
1/f/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8AGU_0491/f/1173:1180,
1/f/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_8AGU_0501/f/1180:1182,
1/f/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_8AGU_0511/f/1187:1194,
1/f/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_8AGU_0521/f/1194:1205,
1/f/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8AGU_0531/f/1207:1209,
1/f/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_8AGU_0541/f/1218:1226,
1/f/1283:1287		Kink-turn
homologous
IL_5TBW_054
NA
IL_8AGU_0551/f/1234:1238,
1/f/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_8AGU_0561/f/1262:1266,
1/f/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8AGU_0571/f/1376:1378,
1/f/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8AGU_0581/f/1385:1387,
1/f/1420:1421		Single bulged A
homologous
IL_5TBW_058
NA
IL_8AGU_0591/f/1388:1395,
1/f/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8AGU_0601/f/1398:1400,
1/f/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8AGU_0611/f/1444:1450,
1/f/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_8AGU_1501/f/1501:1505,
1/f/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_8AGU_0631/f/1532:1536,
1/f/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8AGU_0641/f/1618:1621,
1/f/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8AGU_1551/f/1623:1624,
1/f/1819:1822		Major groove platform related
homologous
IL_8P9A_293
IL_48076.6
IL_8AGU_0661/f/1627:1631,
1/f/1811:1816		No text annotation
geometric
IL_5TBW_066
NA
IL_8AGU_0671/f/1645:1649,
1/f/1806:1810		Triple sheared
geometric
IL_5TBW_067
NA
IL_8AGU_0681/f/1661:1663,
1/f/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8AGU_0691/f/1669:1670,
1/f/1778:1780		Single bulged C
geometric
IL_5TBW_069
NA
IL_8AGU_0701/f/1670:1671,
1/f/1776:1778		Single stack bend
homologous
IL_8C3A_076
NA
IL_8AGU_0711/f/1694:1698,
1/f/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8AGU_0721/f/1702:1707,
1/f/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_8AGU_0731/f/1711:1717,
1/f/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8AGU_0741/f/1883:1889,
1/f/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_8AGU_0751/f/1895:1897,
1/f/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8AGU_0761/f/1898:1901,
1/f/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8AGU_1521/f/1898:1906,
1/f/2333:2337		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_8AGU_0771/f/1901:1906,
1/f/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_8AGU_0781/f/1918:1923,
1/f/1928:1934		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_8AGU_0791/f/1940:1942,
1/f/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8AGU_0801/f/1947:1948,
1/f/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_8AGU_0811/f/2128:2129,
1/f/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8AGU_0821/f/2156:2161,
1/f/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8AGU_0831/f/2196:2199,
1/f/2245:2246		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_8AGU_0841/f/2200:2201,
1/f/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8AGU_0851/f/2204:2206,
1/f/2237:2238		Single bulged U
geometric
IL_2R8S_004
IL_89505.4
IL_8AGU_0861/f/2206:2210,
1/f/2235:2237		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_8AGU_0871/f/2211:2217,
1/f/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_8AGU_0881/f/2276:2277,
1/f/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_8AGU_0891/f/2277:2288,
1/f/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_8AGU_0901/f/2391:2394,
1/f/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_8AGU_0911/f/2396:2398,
1/f/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_8AGU_0921/f/2409:2411,
1/f/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_8AGU_0931/f/2412:2413,
1/f/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8AGU_0941/f/2423:2425,
1/f/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8AGU_0961/f/2444:2445,
1/f/2501:2503		Single bulged A
geometric
IL_7RQB_002
NA
IL_8AGU_0971/f/2451:2462,
1/f/2493:2495		No text annotation
IL_8AGU_0981/f/2466:2469,
1/f/2476:2489		No text annotation
geometric
IL_3U4M_003
IL_75283.2
IL_8AGU_0991/f/2520:2526,
1/f/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8AGU_1001/f/2614:2615,
1/f/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8AGU_1011/f/2666:2668,
1/f/2686:2690		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_8AGU_1021/f/2718:2721,
1/f/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8AGU_1031/f/2770:2773,
1/f/2787:2788		Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_8AGU_1041/f/2823:2824,
1/f/2865:2867		Major groove platform
geometric
IL_5TBW_102
NA
IL_8AGU_1531/f/2823:2826,
1/f/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_8AGU_1051/f/2824:2826,
1/f/2863:2865		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_8AGU_1061/f/2826:2828,
1/f/2862:2863		Major groove platform
homologous
IL_8C3A_112
NA
IL_8AGU_1071/f/2828:2830,
1/f/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8AGU_1081/f/2835:2839,
1/f/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_8AGU_1091/f/2876:2877,
1/f/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_8AGU_1101/f/2879:2881,
1/f/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8AGU_1111/f/2881:2882,
1/f/2940:2943		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_8AGU_1121/f/2889:2891,
1/f/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8AGU_1541/f/2889:2892,
1/f/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_8AGU_1131/f/2891:2892,
1/f/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_8AGU_1141/f/2918:2920,
1/f/2926:2928		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_8AGU_1151/f/2960:2961,
1/f/2970:2972		Single bulged A
geometric
IL_7RQB_101
NA
IL_8AGU_1161/f/3004:3007,
1/f/3139:3144		Double sheared
homologous
IL_5TBW_114
NA
IL_8AGU_1171/f/3012:3014,
1/f/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_8AGU_1181/f/3018:3025,
1/f/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_116
NA
IL_8AGU_1191/f/3047:3051,
1/f/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_8AGU_1201/f/3054:3059,
1/f/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8AGU_1211/f/3063:3064,
1/f/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8AGU_1221/f/3103:3107,
1/f/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8AGU_1231/f/3164:3166,
1/f/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8AGU_1241/f/3168:3170,
1/f/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8AGU_1251/f/3177:3179,
1/f/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_8AGU_1261/f/3179:3188,
1/f/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_8AGU_1271/f/3193:3194,
1/f/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_8AGU_1281/f/3225:3229,
1/f/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_8AGU_1291/f/3233:3235,
1/f/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_8AGU_1301/f/3235:3238,
1/f/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_4UYK_003
IL_77658.1
IL_8AGU_1311/f/3300:3303,
1/f/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8AGU_1321/f/3318:3320,
1/f/3387:3388		Single bulged U
homologous
IL_5TBW_130
NA
IL_8AGU_1331/f/3324:3325,
1/f/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_8AGU_1341/f/3328:3330,
1/f/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8AGU_1351/f/3332:3337,
1/f/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8AGU_1361/f/3340:3342,
1/f/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_8AGU_1371/f/3342:3345,
1/f/3360:3363		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8AGU_1381/f/3349:3350,
1/f/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_8AGU_1391/h/15:16,
1/h/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_8AGU_1401/h/21:27,
1/h/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8AGU_1411/h/28:29,
1/h/49:52		Minor groove platform
homologous
IL_5TBW_374
NA
IL_8AGU_1421/h/29:30,
1/h/47:49		Single stack bend
geometric
IL_5TBW_375
NA
IL_8AGU_1431/h/32:36,
1/h/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_8AGU_1441/h/72:80,
1/h/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8AGU_1451/h/84:87,
1/h/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8AGU_1461/i/44:64,
1/i/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_8AGU_1471/i/64:66,
1/i/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8AGU_1481/i/68:69,
1/i/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_8AGU_1491/y/5:7,
1/y/66:68		No text annotation
homologous
IL_5EL4_358
NA

Problematic loops

#loop idProblemSequence
IL_8AGU_001No text annotation
IL_8AGU_017No text annotation
IL_8AGU_047No text annotation
IL_8AGU_062No text annotation
IL_8AGU_151No text annotation
IL_8AGU_065Multiple bulged bases with near cWW
IL_8AGU_095Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8AGU_0011/f/113:123,
1/f/149:158,
1/f/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_8AGU_0181/f/113:124,
1/f/144:158,
1/f/263:267		No text annotation
J3_8AGU_0191/f/185:189,
1/f/205:214,
1/f/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_8AGU_0201/f/340:356,
1/f/363:368,
1/i/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8AGU_0021/f/369:376,
1/f/403:404,
1/i/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_8AGU_0211/f/369:379,
1/f/390:404,
1/i/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8AGU_0031/f/502:503,
1/f/588:597,
1/f/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_8AGU_0041/f/814:820,
1/f/905:907,
1/f/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8AGU_0051/f/828:831,
1/f/863:867,
1/f/892:897		No text annotation
homologous
J3_5TBW_005
NA
J3_8AGU_0061/f/986:987,
1/f/1062:1066,
1/f/1092:1098		No text annotation
homologous
J3_5TBW_006
NA
J3_8AGU_0071/f/1230:1232,
1/f/1256:1262,
1/f/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_8AGU_0081/f/1479:1485,
1/f/1857:1859,
1/f/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_8AGU_0091/f/1488:1491,
1/f/1837:1843,
1/f/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_8AGU_0101/f/1526:1531,
1/f/1591:1595,
1/f/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_8AGU_0221/f/1537:1542,
1/f/1551:1560,
1/f/1579:1584		No text annotation
J3_8AGU_0111/f/1631:1632,
1/f/1641:1645,
1/f/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_8AGU_0231/f/1654:1658,
1/f/1791:1792,
1/f/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8AGU_0121/f/2432:2435,
1/f/2512:2517,
1/f/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8AGU_0131/f/2529:2532,
1/f/2547:2563,
1/f/2578:2581		No text annotation
homologous
J3_8C3A_009
NA
J3_8AGU_0241/f/2651:2653,
1/f/2754:2765,
1/f/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8AGU_0141/f/2664:2666,
1/f/2690:2692,
1/f/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_8AGU_0151/f/2886:2889,
1/f/2914:2916,
1/f/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_8AGU_0251/f/3171:3176,
1/f/3212:3220,
1/f/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8AGU_0161/f/3298:3300,
1/f/3314:3318,
1/f/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_8AGU_0171/h/9:14,
1/h/66:67,
1/h/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_8AGU_0261/i/44:45,
1/i/58:64,
1/i/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_8AGU_0011/f/112:113,
1/f/267:272,
1/f/293:299,
1/f/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8AGU_0021/f/185:189,
1/f/205:208,
1/f/212:214,
1/f/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_8AGU_0031/f/1451:1457,
1/f/1475:1476,
1/f/1877:1880,
1/f/2352:2353		No text annotation
homologous
J4_8C3A_003
NA
J4_8AGU_0041/f/1492:1496,
1/f/1520:1525,
1/f/1614:1615,
1/f/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_8AGU_0051/f/1674:1675,
1/f/1693:1694,
1/f/1752:1753,
1/f/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_8AGU_0061/f/2130:2134,
1/f/2146:2150,
1/f/2186:2190,
1/f/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_8AGU_0071/f/2192:2194,
1/f/2248:2249,
1/f/2267:2276,
1/f/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_8AGU_0081/f/2654:2658,
1/f/2712:2716,
1/f/2740:2742,
1/f/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_8AGU_0091/f/3010:3012,
1/f/3042:3043,
1/f/3098:3100,
1/f/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_8AGU_0101/y/7:10,
1/y/25:27,
1/y/43:49,
1/y/65:66		No text annotation
homologous
J4_6UFG_001
J4_70449.28
J5_8AGU_0011/f/20:22,
1/i/35:42,
1/i/102:107,
1/i/115:116,
1/i/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8AGU_0021/f/658:663,
1/f/799:802,
1/f/941:944,
1/f/1375:1376,
1/f/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8AGU_0031/f/675:678,
1/f/702:706,
1/f/713:721,
1/f/749:751,
1/f/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_8AGU_0041/f/1906:1914,
1/f/1938:1939,
1/f/2109:2110,
1/f/2114:2122,
1/f/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_8AGU_0051/f/2399:2406,
1/f/2815:2823,
1/f/2867:2876,
1/f/2951:2957,
1/f/2975:2980		No text annotation
J5_8AGU_0061/f/2416:2419,
1/f/2611:2614,
1/f/2627:2628,
1/f/2650:2651,
1/f/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_8AGU_0011/f/22:27,
1/f/58:68,
1/f/75:79,
1/f/106:110,
1/f/321:331,
1/i/32:35		No text annotation
J6_8AGU_0021/f/2416:2419,
1/f/2611:2614,
1/f/2627:2628,
1/f/2650:2653,
1/f/2754:2765,
1/f/2793:2804		No text annotation
J7_8AGU_0011/f/949:954,
1/f/967:968,
1/f/1114:1117,
1/f/1141:1146,
1/f/1157:1161,
1/f/1338:1339,
1/f/1365:1370		No text annotation

Problematic loops

No problematic loops


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