HL_8AGU_058

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGU_058 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.085

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8AGU|1|f|C|2693
8AGU|1|f|A|2694
8AGU|1|f|A|2695
8AGU|1|f|A|2696
8AGU|1|f|A|2697
8AGU|1|f|G|2698
8AGU|1|f|G|2699
8AGU|1|f|G|2700

Current chains

Chain f

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L42-A

Chain r

60S ribosomal protein L10