3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AGU_066 not in the Motif Atlas
Homologous match to HL_8C3A_066
Geometric discrepancy: 0.1138
The information below is about HL_8C3A_066
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8AGU|1|f|C|3025
8AGU|1|f|G|3026
8AGU|1|f|A|3027
8AGU|1|f|G|3028
8AGU|1|f|A|3029
8AGU|1|f|G|3030

Current chains

Chain f
25S rRNA

Nearby chains

Chain Z
Ubiquitin-60S ribosomal protein L40
Chain a
RQC2 isoform 1
Chain e
E3 ubiquitin-protein ligase listerin
Chain q
60S ribosomal protein L9-A

Coloring options:


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