HL_8AGU_077

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8AGU|1|i|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGU_077 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.14

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8AGU|1|i|G|124
8AGU|1|i|U|125
8AGU|1|i|A|126
8AGU|1|i|U|127
8AGU|1|i|U|128
8AGU|1|i|C|129

Current chains

Chain i

5.8S rRNA

Nearby chains

Chain d

RPL41A isoform 1

Chain f

Large subunit ribosomal RNA; LSU rRNA