HL_8AGU_078
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAGUCAG
- Length
- 7 nucleotides
- Bulged bases
- 8AGU|1|y|C|17
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGU_078 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.2434
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8AGU|1|y|U|13
8AGU|1|y|A|14
8AGU|1|y|G|15
8AGU|1|y|U|16
8AGU|1|y|C|17
8AGU|1|y|A|21
8AGU|1|y|G|22
Current chains
- Chain y
- P-site tRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- BJ4_G0027750.mRNA.1.CDS.1
- Chain v
- Eukaryotic translation initiation factor 5A-1
Coloring options: