HL_8AGU_082

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCUGAUUUUAUGCAGGC

Length

18 nucleotides

Bulged bases

8AGU|1|f|U|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGU|1|f|G|1561
8AGU|1|f|C|1562
8AGU|1|f|C|1563
8AGU|1|f|U|1564
8AGU|1|f|G|1565
8AGU|1|f|A|1566
8AGU|1|f|U|1567
8AGU|1|f|U|1568
8AGU|1|f|U|1569
8AGU|1|f|U|1570
8AGU|1|f|A|1571
8AGU|1|f|U|1572
8AGU|1|f|G|1573
8AGU|1|f|C|1574
8AGU|1|f|A|1575
8AGU|1|f|G|1576
8AGU|1|f|G|1577
8AGU|1|f|C|1578

Current chains

Chain f

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L25

Chain d

RPL41A isoform 1

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A