HL_8AGV_006

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8AGV|1|f|U|210, 8AGV|1|f|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0556

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8AGV|1|f|C|208
8AGV|1|f|A|209
8AGV|1|f|U|210
8AGV|1|f|A|211
8AGV|1|f|G|212

Current chains

Chain f

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A