HL_8AGV_039

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8AGV|1|f|C|1762, 8AGV|1|f|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3718

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8AGV|1|f|C|1759
8AGV|1|f|A|1760
8AGV|1|f|C|1761
8AGV|1|f|C|1762
8AGV|1|f|U|1763
8AGV|1|f|U|1764
8AGV|1|f|U|1765
8AGV|1|f|G|1766

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A

Chain H

60S ribosomal protein L22-A

Chain e

E3 ubiquitin-protein ligase listerin