HL_8AGV_062

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0877

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8AGV|1|f|C|2840
8AGV|1|f|G|2841
8AGV|1|f|U|2842
8AGV|1|f|U|2843
8AGV|1|f|C|2844
8AGV|1|f|A|2845
8AGV|1|f|U|2846
8AGV|1|f|A|2847
8AGV|1|f|G|2848

Current chains

Chain f

25S rRNA

Nearby chains

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain r

60S ribosomal protein L10

Chain x

Transfer RNA; tRNA