HL_8AGW_027
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8AGW|1|f|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGW_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2388
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8AGW|1|f|C|1239
8AGW|1|f|A|1240
8AGW|1|f|U|1241
8AGW|1|f|G|1242
8AGW|1|f|G|1243
8AGW|1|f|A|1244
8AGW|1|f|A|1245
8AGW|1|f|G|1246
8AGW|1|f|U|1247
8AGW|1|f|C|1248
8AGW|1|f|G|1249
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain z
- 60S ribosomal protein L12-A
Coloring options: