HL_8AGX_012

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8AGX|1|f|U|545, 8AGX|1|f|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.2538

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8AGX|1|f|C|543
8AGX|1|f|C|544
8AGX|1|f|U|545
8AGX|1|f|C|546
8AGX|1|f|G|547
8AGX|1|f|G|548

Current chains

Chain f

25S rRNA

Nearby chains