HL_8AGX_014
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 8AGX|1|f|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_014 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0693
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8AGX|1|f|U|640
8AGX|1|f|C|641
8AGX|1|f|U|642
8AGX|1|f|U|643
8AGX|1|f|G|644
8AGX|1|f|A|645
8AGX|1|f|A|646
8AGX|1|f|A|647
8AGX|1|f|C|648
8AGX|1|f|A|649
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain R
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L3
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