HL_8AGX_021
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 8AGX|1|f|A|913, 8AGX|1|f|G|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_021 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.0763
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8AGX|1|f|G|910
8AGX|1|f|C|911
8AGX|1|f|G|912
8AGX|1|f|A|913
8AGX|1|f|A|914
8AGX|1|f|A|915
8AGX|1|f|G|916
8AGX|1|f|A|917
8AGX|1|f|C|918
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain W
- 60S ribosomal protein L37-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: