HL_8AGX_027
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8AGX|1|f|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2389
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8AGX|1|f|C|1239
8AGX|1|f|A|1240
8AGX|1|f|U|1241
8AGX|1|f|G|1242
8AGX|1|f|G|1243
8AGX|1|f|A|1244
8AGX|1|f|A|1245
8AGX|1|f|G|1246
8AGX|1|f|U|1247
8AGX|1|f|C|1248
8AGX|1|f|G|1249
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain z
- 60S ribosomal protein L12-A
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