HL_8AGX_039
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- 8AGX|1|f|C|1762, 8AGX|1|f|U|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_039 not in the Motif Atlas
- Homologous match to HL_8P9A_150
- Geometric discrepancy: 0.43
- The information below is about HL_8P9A_150
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68791.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8AGX|1|f|C|1759
8AGX|1|f|A|1760
8AGX|1|f|C|1761
8AGX|1|f|C|1762
8AGX|1|f|U|1763
8AGX|1|f|U|1764
8AGX|1|f|U|1765
8AGX|1|f|G|1766
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
- Chain H
- 60S ribosomal protein L22-A
- Chain e
- E3 ubiquitin-protein ligase listerin
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