HL_8AGX_062
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_062 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.0878
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8AGX|1|f|C|2840
8AGX|1|f|G|2841
8AGX|1|f|U|2842
8AGX|1|f|U|2843
8AGX|1|f|C|2844
8AGX|1|f|A|2845
8AGX|1|f|U|2846
8AGX|1|f|A|2847
8AGX|1|f|G|2848
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain r
- 60S ribosomal protein L10
- Chain x
- Transfer RNA; tRNA
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