HL_8AGX_063

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8AGX|1|f|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0896

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8AGX|1|f|A|2897
8AGX|1|f|G|2898
8AGX|1|f|C|2899
8AGX|1|f|A|2900
8AGX|1|f|G|2901
8AGX|1|f|A|2902
8AGX|1|f|A|2903
8AGX|1|f|U|2904

Current chains

Chain f

25S rRNA

Nearby chains

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A