HL_8AGX_080

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_080 not in the Motif Atlas

Homologous match to HL_4V9Q_215

Geometric discrepancy: 0.1966

The information below is about HL_4V9Q_215

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8AGX|1|x|G|53
8AGX|1|x|U|54
8AGX|1|x|U|55
8AGX|1|x|C|56
8AGX|1|x|G|57
8AGX|1|x|A|58
8AGX|1|x|U|59
8AGX|1|x|U|60
8AGX|1|x|C|61

Current chains

Chain x

Ala tRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain f

Large subunit ribosomal RNA; LSU rRNA