HL_8AGX_082
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUUIGCAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_082 not in the Motif Atlas
- Homologous match to HL_4JYZ_002
- Geometric discrepancy: 0.5755
- The information below is about HL_4JYZ_002
- Detailed Annotation
- tRNA anticodon loop with synthetase
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8AGX|1|y|C|31
8AGX|1|y|U|32
8AGX|1|y|U|33
8AGX|1|y|I|34
8AGX|1|y|G|35
8AGX|1|y|C|36
8AGX|1|y|A|37
8AGX|1|y|U|38
8AGX|1|y|G|39
Current chains
- Chain y
- Ala tRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain v
- Eukaryotic translation initiation factor 5A-1
Coloring options: