HL_8AGZ_007

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8AGZ|1|f|G|218, 8AGZ|1|f|A|219, 8AGZ|1|f|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0559

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8AGZ|1|f|G|216
8AGZ|1|f|U|217
8AGZ|1|f|G|218
8AGZ|1|f|A|219
8AGZ|1|f|G|220
8AGZ|1|f|A|221
8AGZ|1|f|A|222
8AGZ|1|f|U|223
8AGZ|1|f|C|224

Current chains

Chain f

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain l

60S ribosomal protein L4-A