HL_8AGZ_029
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8AGZ|1|f|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGZ_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.4711
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8AGZ|1|f|U|1347
8AGZ|1|f|U|1348
8AGZ|1|f|G|1349
8AGZ|1|f|A|1350
8AGZ|1|f|U|1351
8AGZ|1|f|A|1352
8AGZ|1|f|U|1353
8AGZ|1|f|G|1354
8AGZ|1|f|A|1355
8AGZ|1|f|U|1356
8AGZ|1|f|G|1357
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L18-A
- Chain R
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-A
- Chain n
- 60S ribosomal protein L6-B
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