HL_8AGZ_039

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8AGZ|1|f|C|1762, 8AGZ|1|f|U|1764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3718

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8AGZ|1|f|C|1759
8AGZ|1|f|A|1760
8AGZ|1|f|C|1761
8AGZ|1|f|C|1762
8AGZ|1|f|U|1763
8AGZ|1|f|U|1764
8AGZ|1|f|U|1765
8AGZ|1|f|G|1766

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A

Chain H

60S ribosomal protein L22-A