HL_8AGZ_062

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0878

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8AGZ|1|f|C|2840
8AGZ|1|f|G|2841
8AGZ|1|f|U|2842
8AGZ|1|f|U|2843
8AGZ|1|f|C|2844
8AGZ|1|f|A|2845
8AGZ|1|f|U|2846
8AGZ|1|f|A|2847
8AGZ|1|f|G|2848

Current chains

Chain f

25S rRNA

Nearby chains

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain r

60S ribosomal protein L10

Chain x

Transfer RNA; tRNA