HL_8AKN_014

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.083

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8AKN|1|B|G|617
8AKN|1|B|C|618
8AKN|1|B|U|619
8AKN|1|B|C|620
8AKN|1|B|A|621
8AKN|1|B|A|622
8AKN|1|B|C|623

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4

Chain Q

30S ribosomal protein S16