HL_8AKN_083
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- G(PSU)AACUA(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 8AKN|1|a|A|1913
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AKN_083 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.0387
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8AKN|1|a|G|1910
8AKN|1|a|PSU|1911
8AKN|1|a|A|1912
8AKN|1|a|A|1913
8AKN|1|a|C|1914
8AKN|1|a|U|1915
8AKN|1|a|A|1916
8AKN|1|a|PSU|1917
8AKN|1|a|A|1918
8AKN|1|a|A|1919
8AKN|1|a|C|1920
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- Peptide chain release factor RF1
- Chain X
- Transfer RNA; tRNA
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