3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
8AKN|1|a|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AKN_084 not in the Motif Atlas
Homologous match to HL_5J7L_182
Geometric discrepancy: 0.0527
The information below is about HL_5J7L_182
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8AKN|1|a|G|1949
8AKN|1|a|G|1950
8AKN|1|a|U|1951
8AKN|1|a|A|1952
8AKN|1|a|A|1953
8AKN|1|a|G|1954
8AKN|1|a|U|1955
8AKN|1|a|U|1956
8AKN|1|a|C|1957

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain B
Small subunit ribosomal RNA; SSU rRNA
Chain W
Peptide chain release factor RF1
Chain j
50S ribosomal protein L14

Coloring options:


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