HL_8AKN_096

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_096 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1243

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8AKN|1|a|C|2551
8AKN|1|a|OMU|2552
8AKN|1|a|G|2553
8AKN|1|a|U|2554
8AKN|1|a|U|2555
8AKN|1|a|C|2556
8AKN|1|a|G|2557

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain W

Peptide chain release factor RF1