HL_8AKN_100

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8AKN|1|a|G|2751, 8AKN|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_100 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0617

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8AKN|1|a|C|2745
8AKN|1|a|U|2746
8AKN|1|a|G|2747
8AKN|1|a|A|2748
8AKN|1|a|A|2749
8AKN|1|a|A|2750
8AKN|1|a|G|2751
8AKN|1|a|C|2752
8AKN|1|a|A|2753
8AKN|1|a|U|2754
8AKN|1|a|C|2755
8AKN|1|a|U|2756
8AKN|1|a|A|2757
8AKN|1|a|A|2758
8AKN|1|a|G|2759

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13