HL_8AM9_003
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AM9_003 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.1096
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8AM9|1|8|G|62
8AM9|1|8|U|63
8AM9|1|8|U|64
8AM9|1|8|C|65
8AM9|1|8|G|66
8AM9|1|8|A|67
8AM9|1|8|G|68
8AM9|1|8|U|69
8AM9|1|8|C|70
Current chains
- Chain 8
- Leucine tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
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