HL_8AM9_006

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_006 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3309

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8AM9|1|B|U|157
8AM9|1|B|G|158
8AM9|1|B|G|159
8AM9|1|B|A|160
8AM9|1|B|A|161
8AM9|1|B|A|162
8AM9|1|B|C|163
8AM9|1|B|G|164

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20