HL_8AM9_079

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8AM9|1|a|U|1729, 8AM9|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_079 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3283

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8AM9|1|a|C|1727
8AM9|1|a|C|1728
8AM9|1|a|U|1729
8AM9|1|a|C|1730
8AM9|1|a|G|1731
8AM9|1|a|C|1732
8AM9|1|a|G|1733

Current chains

Chain a

23S ribosomal RNA

Nearby chains