HL_8AM9_090

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_090 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.0872

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8AM9|1|a|G|2303
8AM9|1|a|G|2304
8AM9|1|a|U|2305
8AM9|1|a|C|2306
8AM9|1|a|G|2307
8AM9|1|a|G|2308
8AM9|1|a|A|2309
8AM9|1|a|C|2310
8AM9|1|a|A|2311
8AM9|1|a|U|2312
8AM9|1|a|C|2313

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L5